HL_8E49_053

3D structure

PDB id

8E49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC31

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8E49|1|I|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E49_053 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0862

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8E49|1|I|C|2248
8E49|1|I|U|2249
8E49|1|I|G|2250
8E49|1|I|OMG|2251
8E49|1|I|G|2252
8E49|1|I|G|2253
8E49|1|I|C|2254
8E49|1|I|G|2255
8E49|1|I|G|2256

Current chains

Chain I

23S ribosomal RNA

Nearby chains