HL_8EIU_032

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CAGCCGGUAG

Length

10 nucleotides

Bulged bases

8EIU|1|Y|C|16, 8EIU|1|Y|C|17, 8EIU|1|Y|G|18, 8EIU|1|Y|G|19, 8EIU|1|Y|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EIU_032 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.165

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8EIU|1|Y|C|13
8EIU|1|Y|A|14
8EIU|1|Y|G|15
8EIU|1|Y|C|16
8EIU|1|Y|C|17
8EIU|1|Y|G|18
8EIU|1|Y|G|19
8EIU|1|Y|U|20
8EIU|1|Y|A|21
8EIU|1|Y|G|22

Current chains

Chain Y

tRNA-fMET

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA