HL_8EKB_023

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

8EKB|1|1A|A|781, 8EKB|1|1A|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EKB_023 not in the Motif Atlas

Homologous match to HL_7RQB_024

Geometric discrepancy: 0.0379

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

8EKB|1|1A|U|779
8EKB|1|1A|G|780
8EKB|1|1A|A|781
8EKB|1|1A|A|782
8EKB|1|1A|A|783
8EKB|1|1A|A|784
8EKB|1|1A|G|785

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2