HL_8EKB_035

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8EKB|1|1A|U|1396, 8EKB|1|1A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EKB_035 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0456

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8EKB|1|1A|G|1389
8EKB|1|1A|U|1390
8EKB|1|1A|U|1391
8EKB|1|1A|A|1392
8EKB|1|1A|A|1393
8EKB|1|1A|U|1394
8EKB|1|1A|A|1395
8EKB|1|1A|U|1396
8EKB|1|1A|U|1397
8EKB|1|1A|C|1398

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23