HL_8EKB_142
3D structure
- PDB id
- 8EKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CCGCGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EKB_142 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2887
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27483.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8EKB|1|2A|C|1531
8EKB|1|2A|C|1532
8EKB|1|2A|G|1533
8EKB|1|2A|C|1536
8EKB|1|2A|G|1537
8EKB|1|2A|G|1538
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: