HL_8EKB_144

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8EKB|1|2A|A|1614, 8EKB|1|2A|A|1616, 8EKB|1|2A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EKB_144 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0624

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8EKB|1|2A|C|1612
8EKB|1|2A|G|1613
8EKB|1|2A|A|1614
8EKB|1|2A|C|1615
8EKB|1|2A|A|1616
8EKB|1|2A|C|1617
8EKB|1|2A|A|1618
8EKB|1|2A|G|1619

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2W

50S ribosomal protein L22