HL_8EKB_152

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CG(PSU)AAC(5MU)A(PSU)AA(OMC)G

Length

13 nucleotides

Bulged bases

8EKB|1|2A|A|1913, 8EKB|1|2A|C|1914, 8EKB|1|2A|A|1916

QA status

Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EKB_152 not in the Motif Atlas

Homologous match to HL_7RQB_048

Geometric discrepancy: 0.1164

The information below is about HL_7RQB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EKB|1|2A|C|1909
8EKB|1|2A|G|1910
8EKB|1|2A|PSU|1911
8EKB|1|2A|A|1912
8EKB|1|2A|A|1913
8EKB|1|2A|C|1914
8EKB|1|2A|5MU|1915
8EKB|1|2A|A|1916
8EKB|1|2A|PSU|1917
8EKB|1|2A|A|1918
8EKB|1|2A|A|1919
8EKB|1|2A|OMC|1920
8EKB|1|2A|G|1921

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA