HL_8EKB_198

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

8EKB|1|2a|C|1030|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EKB_198 not in the Motif Atlas

Homologous match to HL_6CZR_094

Geometric discrepancy: 0.5827

The information below is about HL_6CZR_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EKB|1|2a|C|1029
8EKB|1|2a|C|1030
8EKB|1|2a|G|1030|||A
8EKB|1|2a|C|1030|||B
8EKB|1|2a|G|1030|||C
8EKB|1|2a|A|1030|||D
8EKB|1|2a|G|1031
8EKB|1|2a|G|1032

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains