HL_8EKC_053
3D structure
- PDB id
- 8EKC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGCAAUGGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EKC_053 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3122
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EKC|1|A|G|2323
8EKC|1|A|U|2324
8EKC|1|A|G|2325
8EKC|1|A|C|2326
8EKC|1|A|A|2327
8EKC|1|A|A|2328
8EKC|1|A|U|2329
8EKC|1|A|G|2330
8EKC|1|A|G|2331
8EKC|1|A|C|2332
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L16
- Chain Y
- 50S ribosomal protein L27
- Chain x
- Transfer RNA; tRNA
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