HL_8EKC_076

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EKC_076 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.12

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8EKC|1|a|A|320
8EKC|1|a|A|321
8EKC|1|a|C|322
8EKC|1|a|U|323
8EKC|1|a|G|324
8EKC|1|a|A|325
8EKC|1|a|G|326
8EKC|1|a|A|327
8EKC|1|a|C|328
8EKC|1|a|A|329
8EKC|1|a|C|330
8EKC|1|a|G|331
8EKC|1|a|G|332
8EKC|1|a|U|333

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20