HL_8EMM_012

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8EMM|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EMM_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.206

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8EMM|1|A|G|462
8EMM|1|A|U|463
8EMM|1|A|U|464
8EMM|1|A|A|465
8EMM|1|A|A|466
8EMM|1|A|U|467
8EMM|1|A|A|468
8EMM|1|A|C|469
8EMM|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains