HL_8EMM_013

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EMM_013 not in the Motif Atlas

Homologous match to HL_5J7L_013

Geometric discrepancy: 0.0575

The information below is about HL_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EMM|1|A|G|521
8EMM|1|A|C|522
8EMM|1|A|A|523
8EMM|1|A|G|524
8EMM|1|A|C|525
8EMM|1|A|C|526
8EMM|1|A|G7M|527
8EMM|1|A|C|528

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain X

mRNA