3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_028 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.0669
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_93658.1
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8EMM|1|A|C|1314
8EMM|1|A|U|1315
8EMM|1|A|G|1316
8EMM|1|A|C|1317
8EMM|1|A|A|1318
8EMM|1|A|A|1319
8EMM|1|A|C|1320
8EMM|1|A|U|1321
8EMM|1|A|C|1322
8EMM|1|A|G|1323

Current chains

Chain A
16S rRNA

Nearby chains

Chain M
30S ribosomal protein S13
Chain N
30S ribosomal protein S14
Chain S
30S ribosomal protein S19

Coloring options:


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