HL_8EMM_032
3D structure
- PDB id
- 8EMM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 8EMM|1|Y|C|16, 8EMM|1|Y|G|18, 8EMM|1|Y|G|19, 8EMM|1|Y|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EMM_032 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1737
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
8EMM|1|Y|C|13
8EMM|1|Y|A|14
8EMM|1|Y|G|15
8EMM|1|Y|C|16
8EMM|1|Y|C|17
8EMM|1|Y|U|17|||A
8EMM|1|Y|G|18
8EMM|1|Y|G|19
8EMM|1|Y|U|20
8EMM|1|Y|A|21
8EMM|1|Y|G|22
Current chains
- Chain Y
- Met-NH-tRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: