HL_8EMM_032

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

8EMM|1|Y|C|16, 8EMM|1|Y|G|18, 8EMM|1|Y|G|19, 8EMM|1|Y|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EMM_032 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.1737

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8EMM|1|Y|C|13
8EMM|1|Y|A|14
8EMM|1|Y|G|15
8EMM|1|Y|C|16
8EMM|1|Y|C|17
8EMM|1|Y|U|17|||A
8EMM|1|Y|G|18
8EMM|1|Y|G|19
8EMM|1|Y|U|20
8EMM|1|Y|A|21
8EMM|1|Y|G|22

Current chains

Chain Y

Met-NH-tRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA