HL_8EMM_033
3D structure
- PDB id
- 8EMM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EMM_033 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.1324
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
8EMM|1|Y|G|31
8EMM|1|Y|C|32
8EMM|1|Y|U|33
8EMM|1|Y|C|34
8EMM|1|Y|A|35
8EMM|1|Y|U|36
8EMM|1|Y|A|37
8EMM|1|Y|A|38
8EMM|1|Y|C|39
Current chains
- Chain Y
- Met-NH-tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 30S ribosomal protein S12
- Chain X
- mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: