3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
UUUCGA
Length
6 nucleotides
Bulged bases
8EMM|1|a|U|139
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_041 not in the Motif Atlas
Geometric match to HL_4LFB_031
Geometric discrepancy: 0.2
The information below is about HL_4LFB_031
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_61337.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
49

Unit IDs

8EMM|1|a|U|137
8EMM|1|a|U|138
8EMM|1|a|U|139
8EMM|1|a|C|140
8EMM|1|a|G|141
8EMM|1|a|A|142

Current chains

Chain a
23S rRNA

Nearby chains

Chain s
50S ribosomal protein L23

Coloring options:


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