HL_8EMM_043

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8EMM|1|a|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EMM_043 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.0573

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8EMM|1|a|G|194
8EMM|1|a|A|195
8EMM|1|a|A|196
8EMM|1|a|A|197
8EMM|1|a|C|198
8EMM|1|a|A|199
8EMM|1|a|U|200
8EMM|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

50S ribosomal protein L28