3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_051 not in the Motif Atlas
Homologous match to HL_7RQB_015
Geometric discrepancy: 0.0514
The information below is about HL_7RQB_015
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

8EMM|1|a|C|462
8EMM|1|a|G|463
8EMM|1|a|U|464
8EMM|1|a|G|465
8EMM|1|a|A|466
8EMM|1|a|G|467

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain e
50S ribosomal protein L4

Coloring options:


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