3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
8EMM|1|a|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_054 not in the Motif Atlas
Geometric match to HL_5J7L_150
Geometric discrepancy: 0.0456
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8EMM|1|a|U|566
8EMM|1|a|U|567
8EMM|1|a|U|568
8EMM|1|a|U|569
8EMM|1|a|G|570
8EMM|1|a|U|571
8EMM|1|a|A|572
8EMM|1|a|U|573
8EMM|1|a|A|574
8EMM|1|a|A|575

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain k
50S ribosomal protein L15
Chain p
50S ribosomal protein L20
Chain q
Ribosomal protein L21
Chain z
50S ribosomal protein L32

Coloring options:


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