3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
UUAACUG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_057 not in the Motif Atlas
Homologous match to HL_5J7L_153
Geometric discrepancy: 0.1679
The information below is about HL_5J7L_153
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13529.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8EMM|1|a|U|641
8EMM|1|a|U|642
8EMM|1|a|A|643
8EMM|1|a|A|644
8EMM|1|a|C|645
8EMM|1|a|U|646
8EMM|1|a|G|647

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L33
Chain 2
50S ribosomal protein L35

Coloring options:


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