3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GGUAACAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_058 not in the Motif Atlas
Homologous match to HL_5J7L_154
Geometric discrepancy: 0.0849
The information below is about HL_5J7L_154
Detailed Annotation
GNRA wlth tandem sheared
Broad Annotation
No text annotation
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

8EMM|1|a|G|712
8EMM|1|a|G|713
8EMM|1|a|U|714
8EMM|1|a|A|715
8EMM|1|a|A|716
8EMM|1|a|C|717
8EMM|1|a|A|718
8EMM|1|a|C|719

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain O
30S ribosomal protein S15
Chain c
50S ribosomal protein L2

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