3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
UUUAGG
Length
6 nucleotides
Bulged bases
8EMM|1|a|U|827, 8EMM|1|a|G|830
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_061 not in the Motif Atlas
Homologous match to HL_5J7L_157
Geometric discrepancy: 0.0521
The information below is about HL_5J7L_157
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_55195.3
Basepair signature
cWW-F
Number of instances in this motif group
6

Unit IDs

8EMM|1|a|U|826
8EMM|1|a|U|827
8EMM|1|a|U|828
8EMM|1|a|A|829
8EMM|1|a|G|830
8EMM|1|a|G|831

Current chains

Chain a
23S rRNA

Nearby chains

Chain k
50S ribosomal protein L15

Coloring options:


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