3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
G(PSU)GCUAACGU
Length
10 nucleotides
Bulged bases
8EMM|1|a|U|958, 8EMM|1|a|C|961
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_063 not in the Motif Atlas
Homologous match to HL_5J7L_159
Geometric discrepancy: 0.061
The information below is about HL_5J7L_159
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8EMM|1|a|G|954
8EMM|1|a|PSU|955
8EMM|1|a|G|956
8EMM|1|a|C|957
8EMM|1|a|U|958
8EMM|1|a|A|959
8EMM|1|a|A|960
8EMM|1|a|C|961
8EMM|1|a|G|962
8EMM|1|a|U|963

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain l
50S ribosomal protein L16
Chain v
50S ribosomal protein L27

Coloring options:


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