3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GAAACAAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_064 not in the Motif Atlas
Homologous match to HL_5J7L_160
Geometric discrepancy: 0.0626
The information below is about HL_5J7L_160
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_42998.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8EMM|1|a|G|978
8EMM|1|a|A|979
8EMM|1|a|A|980
8EMM|1|a|A|981
8EMM|1|a|C|982
8EMM|1|a|A|983
8EMM|1|a|A|984
8EMM|1|a|C|985

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L20
Chain q
Ribosomal protein L21
Chain y
50S ribosomal protein L30

Coloring options:


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