3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CGACAC(6MZ)G
Length
8 nucleotides
Bulged bases
8EMM|1|a|A|1614, 8EMM|1|a|A|1616
QA status
Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_075 not in the Motif Atlas
Homologous match to HL_5J7L_173
Geometric discrepancy: 0.0441
The information below is about HL_5J7L_173
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

8EMM|1|a|C|1612
8EMM|1|a|G|1613
8EMM|1|a|A|1614
8EMM|1|a|C|1615
8EMM|1|a|A|1616
8EMM|1|a|C|1617
8EMM|1|a|6MZ|1618
8EMM|1|a|G|1619

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain r
50S ribosomal protein L22

Coloring options:


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