3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CUG(OMG)GGCGG
Length
9 nucleotides
Bulged bases
8EMM|1|a|G|2250
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_087 not in the Motif Atlas
Homologous match to HL_7RQB_053
Geometric discrepancy: 0.0633
The information below is about HL_7RQB_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8EMM|1|a|C|2248
8EMM|1|a|U|2249
8EMM|1|a|G|2250
8EMM|1|a|OMG|2251
8EMM|1|a|G|2252
8EMM|1|a|G|2253
8EMM|1|a|C|2254
8EMM|1|a|G|2255
8EMM|1|a|G|2256

Current chains

Chain a
23S rRNA

Nearby chains

Chain Z
Transfer RNA; tRNA
Chain l
50S ribosomal protein L16
Chain v
50S ribosomal protein L27

Coloring options:


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