HL_8EMM_101

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8EMM|1|a|U|2797, 8EMM|1|a|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EMM_101 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.2535

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8EMM|1|a|C|2795
8EMM|1|a|U|2796
8EMM|1|a|U|2797
8EMM|1|a|U|2798
8EMM|1|a|A|2799
8EMM|1|a|A|2800
8EMM|1|a|G|2801

Current chains

Chain a

23S rRNA

Nearby chains