3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CAUGCCG
Length
7 nucleotides
Bulged bases
8EMM|1|b|G|41
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8EMM_104 not in the Motif Atlas
Homologous match to HL_7RQB_070
Geometric discrepancy: 0.085
The information below is about HL_7RQB_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87939.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
8

Unit IDs

8EMM|1|b|C|38
8EMM|1|b|A|39
8EMM|1|b|U|40
8EMM|1|b|G|41
8EMM|1|b|C|42
8EMM|1|b|C|43
8EMM|1|b|G|44

Current chains

Chain b
5S rRNA

Nearby chains

Chain 4
50S ribosomal protein L31
Chain a
Large subunit ribosomal RNA; LSU rRNA
Chain f
50S ribosomal protein L5
Chain n
50S ribosomal protein L18

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3123 s