HL_8EUB_005

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8EUB|1|A1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0581

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8EUB|1|A1|U|194
8EUB|1|A1|U|195
8EUB|1|A1|G|196
8EUB|1|A1|G|197
8EUB|1|A1|A|198
8EUB|1|A1|A|199
8EUB|1|A1|C|200
8EUB|1|A1|A|201

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AY

60S ribosomal protein L26-A

Chain Ae

RPL32 isoform 1