HL_8EUB_011

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_011 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.0676

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8EUB|1|A1|U|382
8EUB|1|A1|G|383
8EUB|1|A1|A|384
8EUB|1|A1|A|385
8EUB|1|A1|A|386
8EUB|1|A1|A|387

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A