HL_8EUB_012

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UUGCCUCGGUAA

Length

12 nucleotides

Bulged bases

8EUB|1|A1|G|542, 8EUB|1|A1|C|543, 8EUB|1|A1|C|546, 8EUB|1|A1|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|A1|U|540
8EUB|1|A1|U|541
8EUB|1|A1|G|542
8EUB|1|A1|C|543
8EUB|1|A1|C|544
8EUB|1|A1|U|545
8EUB|1|A1|C|546
8EUB|1|A1|G|547
8EUB|1|A1|G|548
8EUB|1|A1|U|549
8EUB|1|A1|A|550
8EUB|1|A1|A|551

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A