HL_8EUB_020

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

G(A2M)CGUGCAAAUC

Length

12 nucleotides

Bulged bases

8EUB|1|A1|U|879, 8EUB|1|A1|A|883, 8EUB|1|A1|A|884

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|A1|G|875
8EUB|1|A1|A2M|876
8EUB|1|A1|C|877
8EUB|1|A1|G|878
8EUB|1|A1|U|879
8EUB|1|A1|G|880
8EUB|1|A1|C|881
8EUB|1|A1|A|882
8EUB|1|A1|A|883
8EUB|1|A1|A|884
8EUB|1|A1|U|885
8EUB|1|A1|C|886

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17-A

Chain Aj

60S ribosomal protein L37-A