HL_8EUB_023

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UUCCGGGGUCACCUUGA

Length

17 nucleotides

Bulged bases

8EUB|1|A1|C|1016, 8EUB|1|A1|G|1018

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|A1|U|1014
8EUB|1|A1|U|1015
8EUB|1|A1|C|1016
8EUB|1|A1|C|1017
8EUB|1|A1|G|1018
8EUB|1|A1|G|1019
8EUB|1|A1|G|1020
8EUB|1|A1|G|1021
8EUB|1|A1|U|1022
8EUB|1|A1|C|1023
8EUB|1|A1|A|1030
8EUB|1|A1|C|1031
8EUB|1|A1|C|1032
8EUB|1|A1|U|1033
8EUB|1|A1|U|1034
8EUB|1|A1|G|1035
8EUB|1|A1|A|1036

Current chains

Chain A1

28S rRNA

Nearby chains

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA