HL_8EUB_055

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8EUB|1|A1|G|2618

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0758

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8EUB|1|A1|C|2616
8EUB|1|A1|U|2617
8EUB|1|A1|G|2618
8EUB|1|A1|OMG|2619
8EUB|1|A1|G|2620
8EUB|1|A1|G|2621
8EUB|1|A1|C|2622
8EUB|1|A1|G|2623
8EUB|1|A1|G|2624

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AI

RPL10 isoform 1

Chain Ab

RPL29 isoform 1