HL_8EUB_057

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_057 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1777

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8EUB|1|A1|A|2673
8EUB|1|A1|A|2674
8EUB|1|A1|C|2675
8EUB|1|A1|A|2676
8EUB|1|A1|G|2677
8EUB|1|A1|A|2678
8EUB|1|A1|A|2679
8EUB|1|A1|A|2680
8EUB|1|A1|U|2681

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AJ

RPL11A isoform 1

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA