HL_8EUB_064

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

U(OMU)(OMG)UUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_064 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.1225

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8EUB|1|A1|U|2920
8EUB|1|A1|OMU|2921
8EUB|1|A1|OMG|2922
8EUB|1|A1|U|2923
8EUB|1|A1|U|2924
8EUB|1|A1|C|2925
8EUB|1|A1|A|2926

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3