HL_8EUB_081

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CGACCCUUUGGAAG

Length

14 nucleotides

Bulged bases

8EUB|1|B5|U|192, 8EUB|1|B5|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_081 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2471

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8EUB|1|B5|C|186
8EUB|1|B5|G|187
8EUB|1|B5|A|188
8EUB|1|B5|C|189
8EUB|1|B5|C|190
8EUB|1|B5|C|191
8EUB|1|B5|U|192
8EUB|1|B5|U|193
8EUB|1|B5|U|194
8EUB|1|B5|G|195
8EUB|1|B5|G|196
8EUB|1|B5|A|197
8EUB|1|B5|A|198
8EUB|1|B5|G|199

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A