HL_8EUB_093

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UUGGCCGGUCGGAUUUCCAA

Length

20 nucleotides

Bulged bases

8EUB|1|B5|G|656, 8EUB|1|B5|U|681

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|B5|U|649
8EUB|1|B5|U|650
8EUB|1|B5|G|651
8EUB|1|B5|G|652
8EUB|1|B5|C|653
8EUB|1|B5|C|654
8EUB|1|B5|G|655
8EUB|1|B5|G|656
8EUB|1|B5|U|657
8EUB|1|B5|C|658
8EUB|1|B5|G|676
8EUB|1|B5|G|677
8EUB|1|B5|A|678
8EUB|1|B5|U|679
8EUB|1|B5|U|680
8EUB|1|B5|U|681
8EUB|1|B5|C|682
8EUB|1|B5|C|683
8EUB|1|B5|A|684
8EUB|1|B5|A|685

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BW

RPS22A isoform 1