HL_8EUB_101

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

8EUB|1|B5|U|1059

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_101 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.3398

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91620.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8EUB|1|B5|U|1055
8EUB|1|B5|U|1056
8EUB|1|B5|U|1057
8EUB|1|B5|U|1058
8EUB|1|B5|U|1059
8EUB|1|B5|U|1060
8EUB|1|B5|A|1061
8EUB|1|B5|A|1062
8EUB|1|B5|U|1063
8EUB|1|B5|G|1064

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BB

RPS1A isoform 1

Chain Bb

40S ribosomal protein S27-A