HL_8EUB_116

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUAUUUAG

Length

8 nucleotides

Bulged bases

8EUB|1|EC|A|6840, 8EUB|1|EC|U|6843

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_116 not in the Motif Atlas

Geometric match to HL_4V88_204

Geometric discrepancy: 0.3542

The information below is about HL_4V88_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.1

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8EUB|1|EC|C|6838
8EUB|1|EC|U|6839
8EUB|1|EC|A|6840
8EUB|1|EC|U|6841
8EUB|1|EC|U|6842
8EUB|1|EC|U|6843
8EUB|1|EC|A|6844
8EUB|1|EC|G|6845

Current chains

Chain EC

Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA

Nearby chains

Chain BF

Rps5p

Chain BO

40S ribosomal protein S14-A

Chain Ba

RPS26B isoform 1