HL_8EUB_128

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

8EUB|1|B5|A|416

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EUB_128 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.1269

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8EUB|1|B5|OMC|414
8EUB|1|B5|C|415
8EUB|1|B5|A|416
8EUB|1|B5|A|417
8EUB|1|B5|G|418
8EUB|1|B5|G|419

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AV

60S ribosomal protein L23-A

Chain BG

40S ribosomal protein S6-A

Chain BY

40S ribosomal protein S24-A