HL_8EUB_132
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8EUB_132 not in the Motif Atlas
- Homologous match to HL_8P9A_236
- Geometric discrepancy: 0.4112
- The information below is about HL_8P9A_236
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8EUB|1|B5|A|829
8EUB|1|B5|U|830
8EUB|1|B5|U|831
8EUB|1|B5|U|832
8EUB|1|B5|U|833
8EUB|1|B5|G|834
8EUB|1|B5|U|835
8EUB|1|B5|U|836
8EUB|1|B5|G|837
8EUB|1|B5|G|838
8EUB|1|B5|U|839
8EUB|1|B5|U|840
8EUB|1|B5|U|841
8EUB|1|B5|C|842
8EUB|1|B5|U|843
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BG
- 40S ribosomal protein S6-A
- Chain BL
- 40S ribosomal protein S11-A
Coloring options: