HL_8EV6_008

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

8EV6|1|1A|U|271, 8EV6|1|1A|U|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EV6_008 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.3623

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8EV6|1|1A|G|269
8EV6|1|1A|C|270
8EV6|1|1A|U|271
8EV6|1|1A|U|272
8EV6|1|1A|G|273
8EV6|1|1A|U|274
8EV6|1|1A|C|275

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9