HL_8EV6_023

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

8EV6|1|1A|A|828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EV6_023 not in the Motif Atlas

Homologous match to HL_4WF9_024

Geometric discrepancy: 0.2008

The information below is about HL_4WF9_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

8EV6|1|1A|U|826
8EV6|1|1A|G|827
8EV6|1|1A|A|828
8EV6|1|1A|A|829
8EV6|1|1A|A|830
8EV6|1|1A|A|831
8EV6|1|1A|G|832

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2