HL_8EV6_028

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8EV6|1|1A|A|1113, 8EV6|1|1A|A|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EV6_028 not in the Motif Atlas

Geometric match to HL_5J7L_161

Geometric discrepancy: 0.3518

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8EV6|1|1A|C|1110
8EV6|1|1A|U|1111
8EV6|1|1A|U|1112
8EV6|1|1A|A|1113
8EV6|1|1A|G|1114
8EV6|1|1A|A|1115
8EV6|1|1A|A|1116
8EV6|1|1A|G|1117
8EV6|1|1A|C|1118
8EV6|1|1A|A|1119
8EV6|1|1A|G|1120

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains