HL_8EV7_161

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

8EV7|1|2A|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EV7_161 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.2449

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8EV7|1|2A|C|2143
8EV7|1|2A|U|2144
8EV7|1|2A|C|2145
8EV7|1|2A|C|2146
8EV7|1|2A|G|2147
8EV7|1|2A|G|2148

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2k

30S ribosomal protein S11