HL_8EVQ_024

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVQ_024 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.4157

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8EVQ|1|A1|C|1076
8EVQ|1|A1|U|1077
8EVQ|1|A1|U|1078
8EVQ|1|A1|A|1079
8EVQ|1|A1|A|1080
8EVQ|1|A1|U|1081
8EVQ|1|A1|U|1082
8EVQ|1|A1|G|1083

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AD

RPL5 isoform 1

Chain AT

60S ribosomal protein L21-A

Chain Ab

RPL29 isoform 1