HL_8EVQ_039

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

8EVQ|1|A1|C|1762, 8EVQ|1|A1|U|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVQ_039 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.2908

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8EVQ|1|A1|C|1759
8EVQ|1|A1|A|1760
8EVQ|1|A1|C|1761
8EVQ|1|A1|C|1762
8EVQ|1|A1|U|1763
8EVQ|1|A1|U|1764
8EVQ|1|A1|U|1765
8EVQ|1|A1|G|1766

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AU

60S ribosomal protein L22-A