HL_8EVQ_044

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGGGUACG

Length

8 nucleotides

Bulged bases

8EVQ|1|A1|G|1954, 8EVQ|1|A1|U|1955, 8EVQ|1|A1|A|2093

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVQ_044 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2546

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8EVQ|1|A1|C|1951
8EVQ|1|A1|G|1952
8EVQ|1|A1|G|1953
8EVQ|1|A1|G|1954
8EVQ|1|A1|U|1955
8EVQ|1|A1|A|2093
8EVQ|1|A1|C|2094
8EVQ|1|A1|G|2095

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A