HL_8EVQ_052

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GCUUCGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8EVQ_052 not in the Motif Atlas

Homologous match to HL_8C3A_052

Geometric discrepancy: 0.5957

The information below is about HL_8C3A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70228.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8EVQ|1|A1|G|2469
8EVQ|1|A1|C|2470
8EVQ|1|A1|U|2471
8EVQ|1|A1|U|2472
8EVQ|1|A1|C|2473
8EVQ|1|A1|G|2474
8EVQ|1|A1|G|2475
8EVQ|1|A1|C|2476

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1